PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG443100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 398aa    MW: 41278.6 Da    PI: 6.8473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG443100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.7e-06286326954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  Pavir.5NG443100.1.p 286 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 326
                          599*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.98E-10268331No hitNo description
PROSITE profilePS5088814.449277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-12283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-13283336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-10286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDATFGWASA GHHVDDYFSS QVGCGRFEMD EPFVGACFGQ LQCDEVVLAG GGGGDTGASC  60
QVSSNCGAFE GAAGMVDSDP LAFLGAGTGD SFDAGLLDAA LAFTREHGDT GAVSNGPMLS  120
SYSGTTGGNI SSGESNNYSS GHDPEVVSPT SIMSPTTAPR PPFTHASSHH HQQELHAKRK  180
VADEYPVGNA TTAPAPAPLP RPGGAKRRAA TSISFGQQGA QHSARDPAAA GYEPDMEAMA  240
QVKEMIYRAA AMRPVNLGPE IAAAASAEKP RRKNVRISSD PQTVAARLRR ERVSERLRVL  300
QKLVPGGSKM DTASMLDEAA SYLKFLKSQV QALETLGTRS TSTSTSSAPS RSSQNYNYFG  360
SSSSTPGFLG LARRSSNISP AGYVNPNGST NTCSKLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273EKPRRKN
2268273KPRRKN
3286291RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.51980.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554551e-108AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701869.10.0PREDICTED: transcription factor bHLH69-like
TrEMBLK3XIM10.0K3XIM1_SETIT; Uncharacterized protein
STRINGSi001743m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-35bHLH family protein